WD40 repeat

WD domain, G-beta repeat
Ribbon diagram of the C-terminal WD40 domain of Tup1 (a transcriptional corepressor in yeast), which adopts a 7-bladed beta-propeller fold. Ribbon is colored from blue (N-terminus) to red (C-terminus).[1]
Identifiers
Symbol	WD40
Pfam	PF00400
Pfam clan	CL0186
InterPro	IPR001680
PROSITE	PDOC00574
SCOP2	1gp2 / SCOPe / SUPFAM
CDD	cd00200
Available protein structures: PDB   1b9x​, 1b9y​, 1erj​, 1gg2​, 1got​, 1gp2​, 1gxr​, 1nex​, 1nr0​, 1omw​, 1p22​, 1pev​, 1pgu​, 1pi6​, 1s4u​, 1sq9​, 1tbg​, 1u4c​, 1xhm​, 1yfq​, 2bcj​, 2ce8​, 2ce9​, 2trc​ IPR001680 PF00400 (ECOD; PDBsum)   AlphaFold IPR001680 PF00400

The WD40 repeat (also known as the WD or beta-transducin repeat) is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide.^[2] Tandem copies of these repeats typically fold together to form a type of circular solenoid protein domain called the WD40 domain.

WD40 domain-containing proteins have 4 to 16 repeating units, all of which are thought to form a circularised beta-propeller structure (see figure to the right).^[3][4] The WD40 domain is composed of about 40 to 60^[4] amino acids with a glycine and histidine dipeptide near the N-terminus and a tryptophan and aspartic acid dipeptide most commonly at the C-terminus. Two variable regions are present. The repeats typically form a four-stranded anti-parallel beta sheet or blade. These blades come together to form a propeller with the most common being a seven-bladed beta propeller. The blades interlock so that the last beta strand of one repeat forms with the first three of the next repeat to form the 3D blade structure.^[3][4]

WD40-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control, autophagy and apoptosis.^[5] The underlying common function of all WD40-repeat proteins is coordinating multi-protein complex assemblies, where the repeating units serve as a rigid scaffold for protein interactions. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase.^[3][4]

According to the initial analysis of the human genome WD40 repeats are the eighth largest family of proteins. In all 277 proteins were identified to contain them.^[6] Human genes encoding proteins containing this domain include:

• AAAS, AAMP, AHI1, AMBRA1, APAF1, ARPC1A, ARPC1B, ATG16L1,
• BOP1, BRWD1, BRWD3, BTRC, BUB3,
• C6orf11, CDC20, CDC40, CDRT1, CHAF1B, CIAO1, CIRH1A, COPA, COPB2, CORO1A, CORO1B, CORO1C, CORO2A, CORO2B, CORO6, CORO7, CSTF1,
• DDB2, DENND3, DMWD, DMXL1, DMXL2, DNAI1, DNAI2, DNCI1, DTL, DYNC1I1, DYNC1I2, EDC4,
• EED, EIF3S2, ELP2, EML1, EML2, EML3, EML4, EML4-ALK, EML5, ERCC8,
• FBXW10, FBXW11, FBXW2, FBXW4, FBXW5, FBXW7, FBXW8, FBXW9, FZR1,
• GBL, GEMIN5, GNB1, GNB1L, GNB2, GNB2L1, GNB3, GNB4, GNB5, GRWD1, GTF3C2,
• HERC1, HIRA, HZGJ,
• IFT121, IFT122, IFT140, IFT172, IFT80, IQWD1,
• KATNB1, KIAA1336, KIF21A, KIF21B, KM-PA-2,
• KEAP1,
• LLGL1, LLGL2, LRBA, LRRK1, LRRK2, LRWD1, LYST,
• MAPKBP1, MED16, MORG1,
• NBEA, NBEAL1, NEDD1, NLE1, NSMAF, NUP37, NUP43, NWD1,
• PAAF1, PAFAH1B1, PAK1IP1, PEX7, PHIP, PIK3R4, PLAA, PLRG1, PPP2R2A, PPP2R2B, PPP2R2C, PPP2R2D, PPWD1, PREB, PRPF19, PRPF4, PWP1, PWP2,
• RAE1, RPTOR, RBBP4, RBBP5, RBBP7, RFWD2, RFWD3, RRP9,
• SCAP, SEC13, SEC31A, SEC31B, SEH1L, SHKBP1, SMU1, SPAG16, SPG, STRAP, STRN, STRN3, STRN4, STXBP5, STXBP5L,
• TAF5, TAF5L, TBL1X, TBL1XR1, TBL1Y, TBL2, TBL3, TEP1, THOC3, THOC6, TLE1, TLE2, TLE3, TLE4, TLE6, TRAF7, TSSC1, TULP4, TUWD12,
• UTP15, UTP18,
• WAIT1, WDF3, WDFY1, WDFY2, WDFY3, WDFY4, WDHD1, WDR1, WDR10, WDR11, WDR12, WDR13, WDR16, WDR17, WDR18, WDR19, WDR20, WDR21A, WDR21C, WDR22, WDR23, WDR24, WDR25, WDR26, WDR27, WDR3, WDR31, WDR32, WDR33, WDR34, WDR35, WDR36, WDR37, WDR38, WDR4, WDR40A, WDR40B, WDR40C, WDR41, WDR42A, WDR42B, WDR43, WDR44, WDR46, WDR47, WDR48, WDR49, WDR5, WDR51A, WDR51B, WDR52, WDR53, WDR54, WDR55, WDR57, WDR59, WDR5B, WDR6, WDR60, WDR61, WDR62, WDR63, WDR64, WDR65, WDR66, WDR67, WDR68, WDR69, WDR7, WDR70, WDR72, WDR73, WDR74, WDR75, WDR76, WDR77, WDR78, WDR79, WDR8, WDR81, WDR82, WDR85, WDR86, WDR88, WDR89, WDR90, WDR91, WDR92, WDSOF1, WDSUB1, WDTC1, WSB1, WSB2,
• ZFP106

• Beta-propeller
• Tomosyn, a protein two WD40 domains
• Protein tandem repeats

• Eukaryotic Linear Motif resource motif class LIG_APCC_Dbox_1
• Eukaryotic Linear Motif resource motif class LIG_APCC_KENbox_2
• Eukaryotic Linear Motif resource motif class LIG_COP1
• Eukaryotic Linear Motif resource motif class LIG_CRL4_Cdt2_1
• Eukaryotic Linear Motif resource motif class LIG_CRL4_Cdt2_2
• Eukaryotic Linear Motif resource motif class LIG_EH1_1
• Eukaryotic Linear Motif resource motif class LIG_GLEBS_BUB3_1
• Eukaryotic Linear Motif resource motif class LIG_RAPTOR_TOS_1
• Eukaryotic Linear Motif resource motif class LIG_SCF_FBW7_1
• Eukaryotic Linear Motif resource motif class LIG_SCF_FBW7_2
• Eukaryotic Linear Motif resource motif class LIG_SCF-TrCP1_1
• Eukaryotic Linear Motif resource motif class LIG_WRPW_1
• Eukaryotic Linear Motif resource motif class LIG_WRPW_2
• Eukaryotic Linear Motif resource motif class TRG_ER_diArg_1
• Eukaryotic Linear Motif resource motif class TRG_ER_diLys_1
• Eukaryotic Linear Motif resource motif class TRG_Golgi_diPhe_1
• Eukaryotic Linear Motif resource motif class TRG_PTS2