ModBase
ModBase is a database of annotated comparative protein structure models, containing models for more than 3.8 million unique protein sequences. Models are created by the comparative modeling pipeline ModPipe which relies on the MODELLER program. ModBase is developed in the laboratory of Andrej Sali at UCSF. ModBase models are also accessible through the Protein Model Portal.
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| Content | |
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| Description | Database of comparative protein structure models |
| Contact | |
| Research center | University of California at San Francisco |
| Laboratory | Department of Bioengineering and Therapeutic Sciences |
| Authors | Ursula Pieper, Eswar Narayanan, Ben Webb, Andrej Sali |
| Primary citation | Pieper & al. (2011)[1] |
| Release date | 1998 |
| Access | |
| Website | http://salilab.org/modbase |
| Download URL | ftp://salilab.org/databases/modbase |
| Web service URL | http://salilab.org/modweb |
ModBase is a database of annotated comparative protein structure models, containing models for more than 3.8 million unique protein sequences.[1] Models are created by the comparative modeling pipeline ModPipe which relies on the MODELLER program.
ModBase is developed in the laboratory of Andrej Sali at UCSF. ModBase models are also accessible through the Protein Model Portal.
See also
[edit]References
[edit]- ^ a b Pieper, Ursula; Webb Benjamin M; Barkan David T; Schneidman-Duhovny Dina; Schlessinger Avner; Braberg Hannes; Yang Zheng; Meng Elaine C; Pettersen Eric F; Huang Conrad C; Datta Ruchira S; Sampathkumar Parthasarathy; Madhusudhan Mallur S; Sjölander Kimmen; Ferrin Thomas E; Burley Stephen K; Sali Andrej (Jan 2011). "ModBase, a database of annotated comparative protein structure models, and associated resources". Nucleic Acids Res. 39 (Database issue). England: D465-74. doi:10.1093/nar/gkq1091. PMC 3013688. PMID 21097780.
External links
[edit]
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